How can a Cost Plus Fixed Fee have three different fees, vice one fixed one?
There is nothing that precludes having different CPFF CLINs for different efforts with different profit amounts/percentages.
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You can even have situations where you might have CLINs reflecting multiple compensation arrangements (FFP, CPFF, T&M) all in one contract.
Be sure that each of your CLINs are established and follow the guidelines of the DFARS and DFARS PGI subpart 204.71 and can withstand the scrutiny of your contracting officer, attorney, and budget officer.