Is the contract entitled to the fully negotiated fee or only the incremental portion of the fee.
There are a number of bigger issues here- Was performance allowed to continue in the absence of funds? If so, you may have an Anti-Deficiency Act violation on your hands. Is the contractor entitled to a termination for convenience?
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These major issues aside, I would agree that the task orders are completion type efforts- but again these other issues are paramount and must be resolved first.